T-DNA tagging with a promoterless beta-glucuronidase (GUS) gene genera
ted a transgenic Nicotiana tabacum plant that expressed GUS activity o
nly in developing seed coats. Cloning and deletion analysis of the GUS
fusion revealed that the promoter responsible for seed coat specifici
ty was located in the plant DNA proximal to the GUS gene. A 3.3 kb fra
gment corresponding to the insertion site was isolated from untransfor
med plants. No long open reading frames were detected in this region.
Northern blots and RNase protection assays failed to detect transcript
s from this region in untransformed plants. Furthermore, the insertion
site was situated within the N. tomentosiformis genome of the allotet
raploid species N. tabacum, in a region which is not conserved within
the genus Nicotiana. It is concluded that seed coat-specific GUS expre
ssion in this transgenic plant resulted from T-DNA insertion next to a
cryptic promoter. These results suggest that at least some of the fus
ions generated to marker genes in promoter trapping studies are not as
sociated with conventional gene promoters. The possibility that simila
r insertion events play a role in gene evolution is discussed.