COMPLEX PATTERN OF ALTERNATIVE SPLICING IN THE NORMAL UROPORPHYRINOGEN DECARBOXYLASE GENE - IMPLICATIONS FOR DIAGNOSIS OF FAMILIAL PORPHYRIA-CUTANEA-TARDA

Citation
Jf. Mcmanus et al., COMPLEX PATTERN OF ALTERNATIVE SPLICING IN THE NORMAL UROPORPHYRINOGEN DECARBOXYLASE GENE - IMPLICATIONS FOR DIAGNOSIS OF FAMILIAL PORPHYRIA-CUTANEA-TARDA, Clinical chemistry, 40(10), 1994, pp. 1884-1889
Citations number
27
Categorie Soggetti
Chemistry Medicinal
Journal title
ISSN journal
00099147
Volume
40
Issue
10
Year of publication
1994
Pages
1884 - 1889
Database
ISI
SICI code
0009-9147(1994)40:10<1884:CPOASI>2.0.ZU;2-Z
Abstract
We describe multiple alternative transcripts of uroporphyrinogen decar boxylase mRNA in normal individuals and patients with familial porphyr ia cutanea tarda. mRNA was reverse-transcribed, subjected to the polym erase chain reaction, and analyzed for nucleotide sequence. Seven diff erent transcripts were characterized, and a cryptic splice acceptor si te was identified in intron 1. In all mRNAs the exons abutted at previ ously defined exon boundaries. Characterization of the splice junction s in the genomic DNA showed that splice donor and acceptor sequences c omplied with the consensus sequences for these sites except for the sp lice acceptor sequences of exons 3 and 10. These deviations were prese nt in two normal individuals and one patient with familial porphyria c utanea tarda and were thus unable to explain the multiple aberrant uro porphyrinogen decarboxylase transcripts. We conclude that apparent del etions observed in transcripts derived from the uroporphyrinogen decar boxylase gene in patients with familial porphyria cutanea tarda should be interpreted with caution.