The lipophilicity (or hydrophobicity) of amino acids is an important p
roperty relevant for protein folding and therefore of great interest i
n protein engineering. For peptides or peptidomimetics of potential th
erapeutic interest, lipophilicity is related to absorption and distrib
ution, and thus indirectly relates to their bioactivity. A rationaliza
tion of peptide lipophilicity requires basic knowledge of the lipophil
icity of the constituting amino acids. In the present contribution we
will review methods to measure or calculate the lipophilicities of ami
no acids, including unusual amino acids, and we will make a comparison
between various lipophilicity scales.