A recently cloned rat kidney protein (NBAT) mediates the sodium-indepe
ndent transport of neutral as well as basic amino acids and cystine wh
en expressed in Xenopus laevis oocytes. The human equivalent of this t
ransporter may be the one that is defective in cystinuria. Immunocytoc
hemical studies have indicated that NBAT is primarily localized in the
brush border membranes of rat kidney and intestinal epithelial cells,
a localization consistent with its proposed role in amino acid transp
ort. Two contrasting topological models have been proposed for NBAT: a
four membrane-spanning domain (MSD) Nin-Cin model and a single MSD Ni
n-Cout model. We have investigated the topology of this membrane prote
in using two different approaches. One method was an immunofluorescent
labeling technique in which intact or membrane-permeabilized cells ex
pressing NBAT were probed with antibodies directed against putative ex
tracellular and intracellular domains of the protein. In the second me
thod, fragments generated by limited surface proteolysis of intact bru
sh border membrane vesicles were subjected to immunoblot analysis usin
g several site-specific antibodies. Both approaches yielded results co
nsistent with a four MSD Nin-Cin topological model for NBAT.