Molecular analyses in recent years have begun to elucidate the identit
y and role of two extrachromosomal DNAs found in apicomplexan parasite
s. One of these is a small tandemly repeated DNA that encodes three cl
assical mitochondrial protein coding genes, attesting to its identity.
This molecule also encodes mitochondrial rRNAs as small fragments in
scattered locations. Despite their unusual nature, evidence suggests t
hat these rRNAs are functional. They offer an opportunity to evaluate
structure-function correlations in the absence of much of the more var
iable sequences found in other rRNAs. The second extrachromosomal DNA
has characteristics reminiscent of chloroplast DNAs and thus points to
an unexpected ancestry for the apicomplexans. Both DNAs are inherited
maternally, as is usual for organelle DNAs, but their subcellular loc
ations have not been demonstrated unequivocally. Although the majority
of studies with these two DNAs thus far have been with Plasmodium spe
cies, evidence from other apicomplexans suggests that these unusual or
ganelle genomes are common to the phylum.