The organisation of organ formation is still an unsolved problem. Muta
tions in the zygotic lethal gene pha-1 affect a late step during organ
development in the nematode C. elegans. In mutant embryos all tissues
in the pharynx fail to undergo terminal differentiation and morphogen
esis. The expression of an early differentiation marker in pharyngeal
muscle precursors is not impaired in mutant embryos, which suggests th
at pharynx cells still acquire their identity. Therefore the gene defi
nes an organ-specific terminal differentiation function. We cloned and
sequenced the pha-1 gene and found that the deduced protein sequence
contains features characteristic of the bZIP family of transcription f
actors. During embryogenesis a transgenic pha-1 reporter construct is
expressed transiently in all pharynx precursor cells at the time when
these cells become restricted to form the pharynx organ. A mosaic anal
ysis of the requirement of pha-1 activity during pharynx formation is
consistent with the notion that pha-1 acts cell-autonomously in all ce
lls of the pharynx primordium. The data suggest that pha-l initiates a
nd coordinates programs required for cytodifferentiation and morphogen
esis in all cell types of the entire organ on the transcriptional leve
l. We propose that organs are independent developmental units whose id
entity is reflected on the gene regulatory level.