Electrophoretic karyotypes of strains from the astaxanthin-producing y
east Phaffia rhodozyma have been established. Intact chromosomal DNA m
olecules released from protoplasts were separated by orthogonal field
alternation gel electrophoresis (OFAGE) and contour clamped homogeneou
s electric field (CHEF). Both small and large chromosomal DNA molecule
s were resolved simultaneously by optimizing the running conditions. E
lectrophoretic karyotypes among the Phaffia isolates examined differed
significantly. Seven to thirteen chromosomal bands, ranging in size f
rom 0.83 Mb to 3.50 Mb, were resolved, giving total genome sizes of ab
out 15.4 to 23.2 Mb. Ribosomal DNA has been assigned to chromosomal ba
nds using a heterologous gene probe.