The phenotypic expression in familial adenomatous polyposis (FAP) is v
ariable, This study compares the phenotype of 27 patients with an iden
tical 5 base pair (bp) deletion at codon 1309 with a group of 61 match
ed patients with FAP where knowledge of specific mutations is not avai
lable and with seven other different mutations in 24 subjects. Patient
s with the codon 1309 deletion have significantly more colorectal poly
ps at the time of colectomy than age and sex matched FAP controls (p=0
.0001). The median number of polyps in colectomy specimens of patients
with the deletion at codon 1309 was 4000 (interquartile (IQ) range 30
00-4875), compared with 600 (IQ range 488-1400) in the matched control
s. Mutations at codon 1323, 1407, and 233 were also associated with la
rge numbers of polyps. Desmoid disease and extracolonic cancers were m
ore common with the mutation at codon 1309 (p=0.003). In conclusion, t
here may be a correlation between a specific germline mutation and the
number of bowel polyps. There is residual heterogeneity in phenotypic
expression, however, and this may result from the influence of other
genes, specific environmental factors or chance.