Candida boidinii is a methylotrophic yeast in which several growth sub
strates can cause vigorous peroxisomal proliferation. While such diver
se substrates as methanol, oleic acid and D-alanine induce different p
eroxisomal metabolic pathways, membranes seem to contain common abunda
nt peroxisomal membrane proteins (PMPs). These proteins have been term
ed PMP31, PMP32 and PMP47. The gene encoding PMP47 has been previously
cloned and analysed. We now report the isolation of a second PMP47 ge
ne (or allele) as well as PMP31 and PMP32. PMP47A and PMP47B shark 95%
sequence identity at the amino acid level. PMP31 and PMP32 each conta
in 256 amino acids and are highly similar (97% identity) in protein se
quence. Both PMP31 and PMP32 are predicted to span the membrane once o
r twice. All abundant PMPs of C. boidinii are basic in charge; they al
l have predicted isoelectric points above 10. RNAs corresponding to th
e PMP47s and to PMPs31-32 are strongly induced by methanol, oleic acid
and D-alanine. While the PMP47s probably encode substrate carriers, t
he functions of PMP31 and PMP32 from C. boidinii are still unknown. Th
e GenBank Accession Numbers for PMP47B, PMP31, and PMP32 are L27998, L
27999 and L28000, respectively. The 5' untranslated sequence of PMP47A
, accession number J05672, has been corrected.