As part of the growing effort to understand the role inositol phosphat
es and inositol lipids play in the regulation of vesicle traffic withi
n nerve terminals, we determined whether or not the synapse-specific c
lathrin assembly protein AP-3 can interact with inositol lipids. We fo
und that soluble dioctanoyl-phosphatidylinositol 3,4,5-trisphosphate (
DiC(8)-PtdIns(3,4,5)P-3) was only 7.5-fold weaker a ligand than D-myo-
inositol hexakisphosphate in assays that measured the displacement of
D-myo-[H-3]inositol hexakisphosphate. In functional as says we found t
hat both of these ligands inhibited clathrin assembly, but DiC(8)-PtdI
ns(3,4,5)P-3 was more potent and exhibited a larger maximal effect. We
also examined the structural features of DiC(8)-PtdIns(3,4,5)P-3 that
establish specificity. Dioctanoyl-phosphatidylinositol 3,4-bisphospha
te, which does not have a 5-phosphate, and 4,5-O-bisphosphoryl D-myo-i
nosityl 1-O-(1,2-O-diundecyl)-sn-3-glycerylphosphate, which does not h
ave a 3-phosphate, were, respectively, a-fold and 4 fold less potent t
han DiC(8)-PtdIns(3,4,5)P-3 as inhibitors of clathrin assembly. Deacyl
ation of DiC(8)-PtdIns(3,4,5)P-3 reduced its affinity for AP 3 almost
20-fold, and also dramatically lowered its ability to inhibit clathrin
assembly. The deacylated products of the soluble derivatives of phosp
hatidylinositol 3,4-bisphosphate and phosphatidylinositol 4,5-bisphosp
hate were both not significant inhibitors of clathrin assembly. It the
refore appears that the interactions of inositides with AP-3 should no
t be considered simply in terms of electrostatic effects of the highly
charged phosphate groups. Ligand specificity appears also to be media
ted by hydrophobic interactions with the fatty-acyl chains of the inos
itol lipids.