Spontaneous, phenotypically stable mutations at the beta-galactosidase
locus (lacL-lacM) in Lactobacillus helveticus were identified and ana
lyzed. We found that a significant number of mutations were caused by
integration of a new IS element, ISL2, into these lac genes. ISL2 is 8
58 bp long, flanked by 16-bp perfect inverted repeats and generates 3-
bp target duplications upon insertion. It contains one open reading fr
ame, which shows significant homology (40.1% identity) to the putative
transposase of IS702 from Cyanobacterium calothrix. ISL2 is present i
n 4-21 copies in the L. helveticus genome, but it is not found in othe
r lactic acid bacteria. Its divergence in copy number and genomic loca
tions in different L. helveticus strains makes it useful as a tool for
strain identification by genetic fingerprinting.