Analytical methodology developed for the trace analysis of natural pro
ducts in crude extracts was utilized for the rapid and systematic stru
cture elucidation of taxanes in Taxus extracts and process intermediat
es. This method integrates analytical hplc, uv detection, uv spectrosc
opy, full-scan ionspray mass spectrometry and tandem mass spectrometry
on-line. The identification of structure of a taxane is based on comp
aring the mass spectrometric characteristics of the taxane with the pa
clitaxel substructural ''template.'' Analytical data for taxanes in pr
eparations from Taxus brevifolia and Taxus baccata were observed, incl
uding chromatographic characteristics using a standard hplc system, mo
lecular weight, and collision induced dissociation (cid) tandem mass s
pectrometry (ms/ms) product ion spectra. The data obtained for 18 taxa
nes from natural sources using this method provided a taxane profile d
atabase useful for the rapid identification of taxanes in mixtures and
samples of limited quantity.