Ca. Meacham, PHYLOGENETIC-RELATIONSHIPS AT THE BASAL RADIATION OF ANGIOSPERMS - FURTHER STUDY BY PROBABILITY OF CHARACTER COMPATIBILITY, Systematic botany, 19(4), 1994, pp. 506-522
Difficulties in obtaining convincing angiosperm phylogenies are often
attributed to widespread homoplasy among angiosperms. Direct evidence
about homoplasy in individual characters can be obtained by character
compatibility analysis. If two characters are incompatible, then at le
ast one involves homoplasy. The probability of compatibility at random
for two characters can be calculated or estimated by simulation. The
number of compatibilities actually found for a given character can be
compared with the number of compatibilities expected at random. The fr
equency with which a random character would receive as many or more co
mpatibilities with other characters in the data set as the actual char
acter is called the Frequency of Compatibility Attainment. This measur
e was calculated for the characters of primitive angiosperms scored by
Donoghue and Doyle (1989a). Parsimony analysis of sets of characters
with different frequency of compatibility attainment values show corre
sponding levels of homoplasy as determined by homoplasy indices. A par
simony analysis of the characters in the Donoghue and Doyle data set t
hat have a low frequency of compatibility attainment alters some of th
e conclusions reached by Donoghue and Doyle regarding placement of tax
a and significance of characters. The less homoplastic characters sugg
est that the genus Nelumbo is placed at a position near Nymphaeales ra
ther than near Ranunculidae. Other realignments are suggested. Maximum
parsimony trees based on the less homoplastic characters tend to sugg
est a single evolutionary origin for the chloranthoid tooth, thus sugg
esting that the chloranthoid tooth is homologous in all taxa that poss
ess it. The evolutionary homology of the chloranthoid tooth is signifi
cant in that this character is preserved in the megafossil record of a
ngiosperms and has been used to adduce relationships of ancient angios
perm lineages.