The alpha(1E) voltage-dependent calcium channel has not been clearly i
dentified with a specific neuronal calcium current, To help identify t
he role of alpha(1E), we examined differential expression of alpha(1E)
splice variants in mouse brain and cultured cell lines and examined t
he gene structure of the region encoding the amino terminal. Three spl
ice variants were analyzed by a ribonuclease protection assay, and a f
ourth variant reported previously in a fetal human alpha(1E) sequence
was also detected in mouse brain and a pituitary cell line. Whole brai
n, telencephalon, and olfactory bulb contained predominantly the splic
e variant corresponding to alpha(1E-1) although other known variants c
ould be detected. Neuroendocrine cells in vitro (BTC3 insulinoma cells
and AtT-20 pituitary cell lines) expressed predominantly one alpha(1E
) isoform. The existence of a 5' exon accounting for the origin of var
iant 5' ends reported in different species was suggested by the sequen
ce of the mouse alpha(1E) gene in the region encoding the amino termin
al.