An experimental respirometer system and a theoretical simulation model
were developed to study the dynamics of water movement, oxygen supply
and biological processes on the aggregate scale in unsaturated soil.
The experimental system enables one to measure simultaneously the dist
ribution of water, oxygen, and chemical substances as a function of sp
ace and time in an unsaturated, artificially made, homogeneous, cylind
rical aggregate and the changes in atmospheric composition as a functi
on of time in the chamber that contains the aggregate. Non-destructive
measurements during an experiment involve gamma ray attenuation, gas
chromatography and polarography. Destructive measurements are performe
d at the end of an experiment in the form of chemical analyses of soil
. The theoretical model enables one to calculate simultaneously the di
stribution of water, bacteria, gases (e.g. oxygen, carbon dioxide and
molecular nitrogen), absolute soil atmospheric pressure and solutes (e
.g. nitrate and glucose) as a function of space and time for exactly t
he same cylindrical geometry as in the experimental set up. Also, the
changes in atmospheric composition as a function of time in the chambe
r that contains the aggregate are calculated. Except for water transpo
rt, all processes are caused by microbial activity, since roots are ab
sent in the aggregate. The respirometer system was designed to generat
e coherent data sets to evaluate the simulation model, while the model
was needed to more completely interpret the data obtained from the ex
periments. The reported experiment shows that hysteresis in the soil w
ater characteristic strongly affects the water distribution in the agg
regate. As a result, the oxygen supply to the interior of the aggregat
e is decreased to such an extent, that anaerobiosis is maintained ther
e after the oxygen is consumed. The respiratory quotient (RQ) was abou
t one in the experiment, although one would expect larger values in pa
rtially anaerobic soil. Therefore, the RQ does not seem a sensitive me
asure to decide whether a soil is partially anaerobic. Nevertheless, t
he consumption rate of oxygen and the production rate of carbon dioxid
e compared well with field data. This is the result of the pretreatmen
t of the soil, which aimed at avoiding the flush of microbial activity
upon wetting. The simulated results showed a satisfactory agreement w
ith the experimental data: part of the experimental results could be d
escribed quantitatively, whereas other data that deviated from the exp
erimental data could be understood by studying the dynamic behaviour o
f the model. Hysteresis in the soil water retention curve resulted in
low values of the gas-filled porosities in the outer shell of the part
ially wetted aggregate, permitting gaseous exchange only through the w
ater phase of soil. As a result anaerobiosis occurred. The model is ve
ry sensitive for the so-called critical gas filled porosity below whic
h no ps-continuous pores exists. The simulated respiratory quotient wa
s seen to be strongly affected by transport processes. Therefore, also
on theoretical grounds it was concluded that RQ is not a sensitive in
dicator of partial anaerobiosis in soil. The objective of this paper i
s to describe both the experimental respirometer system and the theore
tical simulation model, and to report some of the measurements.