AMONG the Eukaryota, the true fungi comprise four divisions (Chytridio
mycota, Zymogomycota, Ascomycota and Basidiomycota) that constitute a
natural group which is thought to have diverged about 1 billion (10(9)
) years ago, believed also to be the time of divergence between metaph
yta and metazoa lineages1. The endosymbionts responsible for the most
prevalent plant root symbiosis, the vesicular-arbuscular mycorrhizae (
VAM) or, more appropriately, arbuscular mycorrhizae, comprise 130 spec
ies of fungi classified in the Zygomycotina, order Glomales2-4. The ar
buscular endomycorrhizae are considered to be ecologically important f
or most vascular plants5-8 in view of their beneficial effects on plan
t growth and survival. They are one of the few plant-fungus associatio
ns with a fossil record and may even have facilitated the origin of la
nd flora. But the biochemical and genetic characterization of these mi
crosymbionts has been hampered by the inability to grow them in pure c
ulture. To investigate the origin and clarify the phylogenetic relatio
nships of these organisms, we have sequenced ribosomal DNA genes from
twelve species. Our phylogenetic analyses confirm the existence of thr
ee families within arbuscular fungi on the basis of morphological char
acters. We obtain approximate dates for the divergence of major branch
es on the phylogenetic tree. These include an estimate for the origin
of VAM-like fungi of 353-462 Myr ago, which is consistent with the hyp
othesis that VAM were instrumental in the colonization of land by anci
ent plants.