Genomic mismatch scanning (GMS) is a new method of genetic linkage ana
lysis that does not require conventional polymorphic markers or gel el
ectrophoresis. GMS is ideally suited to affected-relative-pair mapping
. DNA fragments from all regions of identity-by-descent between two re
latives are isolated based on their ability to form extensive mismatch
-free hybrid molecules. The genomic origin of this selected pool of DN
A fragments is then mapped in a single hybridization step. Here we dem
onstrate the practicality of GMS in a model organism, Saccharomyces ce
revisiae. GMS is likely to be applicable to other organisms, including
humans, and may be of particular value in mapping complex genetic tra
its.