Recombinant vaccines are being developed against a number of species o
f protozoan parasites in the genus Babesia. Protozoan parasites are no
torious for their diversity of strains and their ability to express fa
milies of equivalent, but antigenically distinct, surface proteins. In
order to reduce the likelihood of evasion of the immune response indu
ced by a recombinant vaccine, ideal components should be essential pro
teins encoded by single copy genes. The proteins should also have a li
mited ability to tolerate polymorphism in amino acid sequence, especia
lly in critical epitopes. While little is known about the function of
the candidate protective antigens, there is now considerable informati
on concerning the variation of a number of candidate vaccine antigens
from several species of Babesia. Four of the well studied antigens are
all members of multi-gene families. The members of the VMSA gene fami
ly of Babesia bovis are also highly polymorphic in sequence. The membe
rs of the Bv60/p58 family of rhoptry protein homologues exhibit more l
imited polymorphism within a single species of Babesia. However, compa
rison of the sequences of the equivalent proteins and the organisation
of the corresponding genes from B. bovis, Babesia bigemina, Babesia c
anis and Babesia ovis suggests that members of this family have the po
tential to acquire and to tolerate substantial polymorphism in amino a
cid sequence. The choice of protein, and particular region of the prot
ein, suitable for incorporation in a recombinant vaccine may require e
xtensive analysis of the genetic systems encoding the candidate antige
ns.