A system to detect a minimal function of Saccharomyces cerevisiae cent
romeres in vivo has been developed. Centromere DNA mutants have been e
xamined and found to be active in a plasmid copy number control assay
in the absence of segregation. The experiments allow the identificatio
n of a minimal centromere unit, CDE III, independently of its ability
to mediate chromosome segregation. Centromere-mediated plasmid copy nu
mber control correlates with the ability of CDE III to assemble a DNA-
protein complex. Cells forced to maintain excess copies of CDE III exh
ibit increased loss of a nonessential artificial chromosome. Thus, seg
regationally impaired centromeres can have negative effects in trans o
n chromosome segregation. The use of a plasmid copy number control ass
ay has allowed assembly steps preceding chromosome segregation to be d
efined.