Thymocytes in mutant mice with severe combined immunodeficiency (scid
thymocytes) show ongoing recombination of some T-cell receptor delta g
ene elements, generating signal joints quantitatively and qualitativel
y indistinguishable from those in wild-type fetal thymocytes. Excised
Ddelta2-Jdelta1 and Ddelta1-Ddelta2 rearrangements are detectable at l
evels equivalent to or greater than those in thymocytes from wild-type
mice on fetal day 15. Signal junctional modification, shown here to o
ccur frequently in wild-type adult but not newborn excised Ddelta2-Jde
lta1 junctions, can occur normally in adult scid thymocytes. Excised D
delta1-Ddelta2 scid junctions, similar to wild-type thymocytes, includ
e pseudonormal coding junctions as well as signal junctions. Inversion
al Ddelta-Ddelta2 rearrangements, generating conventional hybrid junct
ions, are also reproducibly detectable in scid thymus DNA. These hybri
ds, unlike those reported for artificial recombination constructs, do
not show extensive nucleotide loss. In contrast to the normal or high
incidences of Ddelta1-, Ddelta2-, and Jdelta-associated signal junctio
ns in scid thymocytes, Vdelta1, Vgamma3, and Vgamma1.2 signal products
are undetectable in scid thymocytes or are detectable at levels at le
ast 10-fold lower than the levels in wild-type fetal thymocytes. These
findings confirm biased T-cell receptor element recombination by V(D)
J recombinase activity of nontransformed scid thymocytes and indicate
that analysis of in vivo-mediated gene rearrangements is important for
full understanding of how the scid mutation arrests lymphocyte develo
pment.