The two infraorders of anthropoid primates, Platyrrhini (New World mon
keys) and Catarrhini (Old World monkeys and the hominoids) are estimat
ed to have diverged from a common ancestor 37 million years ago. The m
ajor histocompatibility complex class II DRB gene and haplotype polymo
rphism of the Catarrhini has been characterized in several recent stud
ies. The present study was undertaken to obtain information on the DRB
polymorphism of the Platyrrhini. Fifty-five complete exon 2 DRB seque
nces were obtained from six species of Platyrrhini representing both t
he Callitrichidae and the Cebidae families. Combined with the results
of a parallel contig mapping study, our data indicate that at least th
ree loci (DRB103, DRB3, and DRB5) are shared by the Catarrhini and th
e Platyrrhini. However, the three loci are occupied by functional gene
s in the former infraorder and mostly by pseudogenes in the latter. In
stead of the pseudogenes, the Platyrrhini have evolved a new set of ap
parently functional genes - DRB11 and DRBW12 through DRB*W19, which h
ave thus far not been found in the Catarrhini. The DRBW13, *W14, *W15
, W17, *W18, and *W19 genes seem to be restricted to the Cebidae fami
ly, whereas the DRBW16 locus has so far been documented in the Callit
richidae family only. The DRB alleles of the cotton-top tamafin, and p
erhaps also those of the common marmoset (both members of the family C
allitrichidae), are characterized by low nucleotide diversity, possibl
y indicating that they diverged from a common ancestral gene relativel
y recently.