The importance of the colonic microflora in health and nutrition is we
ll known, but how they colonize and become established in the colon is
not well understood. We therefore characterized the quantitative and
qualitative changes of the colonic microflora during the first 120 day
s of postnatal development. Unlike previous studies, changes were defi
ned for individual pigs using in situ samples collected anaerobically
and aseptically from the distal colon. Although the colons were steril
e at birth, they were rapidly colonized, and within 12 h bacterial den
sities had stabilized at 10(-9)-10(10) bacteria/g colonic content. Fac
ultative anaerobes, notably coliforms, initially dominated the microfl
ora, but were supplanted within 48 h after birth by obligate anaerobes
, which constituted greater than 90% of the microflora thereafter. Bac
teroides spp., the predominant anaerobes in the adult colon, did not m
arkedly increase in abundance until after weaning and were still incre
asing by postnatal day 120. Shifts in the relative abundances of diffe
rent bacterial populations throughout the first 120 days after birth c
onfirm previous reports that the establishment of the adult colonic mi
croflora is a gradual, sequential process, and highlight the need to f
ocus research on anaerobic groups.