The methylation pattern of three X-linked genes, phosphoglycerate kina
se (PGK), hypoxanthine phosphoribosyl transferase (HPRT) and DXS255 de
tected by hypervariable M27beta probe, was analysed to determine the p
roportion of aplastic anaemia (AA) with clonal haematopoiesis in Japan
ese children. Methylation analysis was performed on DNA from separated
granulocytes and compared to that of bone marrow derived fibroblasts
to exclude selective lyonization in all somatic cells. Of 20 female pa
tients examined, the methylation pattern of at least one gene was info
rmative in granulocyte DNA from 18 patients (90%). Of these, 8/20 pati
ents (40%) were heterozygous for PGK, 8/18 (44%) were heterozygous for
HPRT and 17/18 (94%) were heterozygous for DXS255. In 14/18 patients
both alleles were equally methylated. Four patients exhibited a unilat
eral methylation pattern in their granulocytes. The same unilateral pa
ttern was again demonstrated in fibroblasts from two of the four patie
nts suggesting that in the latter one X chromosome was selectively ina
ctivated in all of the somatic cells. The remaining two patients showe
d a unilateral methylation pattern that was restricted to their granul
ocytes, suggesting the existence of true clonal haematopoiesis. They r
esponded well to antilymphocyte globulin (ALG) and presently have no e
vidence of a clonal disorder such as myelodysplastic syndrome (MDS) or
paroxysmal nocturnal haemoglobinuria (PNH). Although these results in
dicate that some children with AA exhibit clonal haematopoiesis, analy
sis of a greater number of subjects will be required to establish the
clinical value of clonal haematopoiesis in patients with AA.