A SINGLE-STRANDED-DNA BINDING-PROTEIN FROM DROSOPHILA-MELANOGASTER - CHARACTERIZATION OF THE HETEROTRIMERIC PROTEIN AND ITS INTERACTION WITH SINGLE-STRANDED-DNA

We describe the purification to near homogeneity of a single-stranded DNA binding protein from 0-18-h embryos of Drosophila melanogaster. Dr osophila SSB (D-SSB) is a heterotrimer with subunits of molecular weig ht of 70 000, 30 000, and 8000. It has a Stokes radius of 48.6 +/- 2 a ngstrom and s20,w = 5.0 +/- 0.2 S. The interaction of D-SSB with ssDNA was examined by the quenching of intrinsic protein fluorescence. The binding site size was determined to be n = 22 +/- 4 nucleotides with a maximum quenching Q(m) = 35 +/- 3%. Equilibrium titrations indicate t hat D-SSB binds with low cooperativity, omega = 10-300, and high appar ent affinity, Komega = (0.7-5) x 10(7) M-1, at 225 mM NaCl. Sedimentat ion of D-SSB bound to small oligonucleotides demonstrates that D-SSB d oes not require protein association for binding. D-SSB stimulates the extent and processivity of DNA synthesis of its cognate DNA polymerase alpha. On the basis of these properties, we conclude that D-SSB is th e Drosophila cognate of the human and yeast SSB/RP-A proteins.