The two-dimensional molecular lamellar arrangement of long chain alkan
es adsorbed on the basal plane of graphite and its thermally induced d
isordering has been studied by variable temperature scanning tunneling
microscopy. Atomic scale resolution of the disordered phase is achiev
ed by studying the quenched high temperature phase. Overall as well as
conformational disorder, in particular molecular kink defects, have b
een observed. High temperature snapshots show that the thermal evoluti
on towards molecular disorder proceeds via small longitudinal fluctuat
ions of molecules or blocks of molecules around their average position
s. For increasing temperatures, molecular excursions along the long ax
is of the molecules become larger until eventually the lamellae lose t
heir individuality, accompanied by substantial loss of lateral order.