A 932-bp retrovirus sequence was cloned by reverse transcriptase PCR f
rom salivary gland tissue of a patient with Sjogren's syndrome. The se
quence is related to that of type B and type D retroviruses and was pr
esent in a sucrose density gradient fraction corresponding to that of
an enveloped retrovirus particle. Sequences amplified from tissues of
eight individuals with or without Sjogren's syndrome had over 90% simi
larity and were present at a level of less than one copy per 10(3) cel
ls. The sequence was not detectable in human genomic DNA by PCR or by
Southern hybridization. These data indicate that the sequence represen
ts an infectiously acquired genome, provisionally called human retrovi
rus 5.