The term pulsed-field gel electrophoresis (PFGE) is used as an acronym
to indicate any technique that resolves (large) DNA molecules by cont
inuous reorientation. It bridges the resolution gap between cytogeneti
c methods (> 5 Mb) and DNA analysis (< 50 kb). Initially, PFGE was use
d to study the chromosomal content of unicellular eukaryotic organisms
of interest to genetic research and population health. Later, PFGE wa
s used to construct megabase maps of segments of the human genome. Suc
cessfull utilization of PFGE requires the availability of very high-mo
lecular weight DNA. This article describes the modification of standar
d DNA protocols necessary to handle large DNA molecules, based on its
encapsidation in agarose.