The dominant I gene inhibits accumulation of anthocyanin pigments in t
he epidermal layer of soybean (Glycine max) seed coats. Seed-coat colo
r is also influenced by the R locus and by the pubescence color allele
s (T, tawny; t, gray). Protein and RNA from cultivars with black (i,R,
T) and brown (i,r,T) seed coats are difficult to extract. To determine
the nature of the interfering plant products, we examined seed-coat e
xtracts from Clark isogenic lines for flavonoids, anthocyanins, and po
ssible proanthocyanidins by thin-layer chromatography. We show that ye
llow seed-coat varieties (I) do not accumulate anthocyanins (anthocyan
idin glycosides) or proanthocyanidins (polymeric anthocyanidins). Matu
re, black (i,R,T) and imperfect-black (i,R,t) seed coats contained ant
hocyanins, whereas mature, brown (i,r,T) and buff (i,r,t) seed coats d
id not contain anthocyanins. In contrast, all colored (i) genotypes te
sted positive for the presence of proanthocyanidins by butanol/HCl and
0.5% vanillin assays. Immature, black (i,R,T) and brown (i,r,T) seed
coats contained significant amounts of procyanidin, a 3',4'-hydroxylat
ed proanthocyanidin. Immature, black (i,R,T) or brown (i,r,T) seed-coa
t extracts also tested positive for the ability to precipitate protein
s in a radial diffusion assay and to bind RNA in vitro. Imperfect-blac
k (i,R,t) or buff (i,r,t) seed coats contained lesser amounts of prope
largonidin, a 4'-hydroxylated proanthocyanidin. Seed-coat extracts fro
m these genotypes did not have the ability to precipitate protein or b
ind to RNA. In summary, the dominant I gene controls inhibition of not
only anthocyanins but also proanthocyanidins in soybean seed coats. I
n homozygous recessive i genotypes, the T-t gene pair determines the t
ypes of proanthocyanidins present, which is consistent with the hypoth
esis that the T locus encodes a microsomal 3'-flavonoid hydroxylase.