Multimer formation reduces plasmid copy number and is an established c
ause of segregational instability. Nevertheless, it is difficult to ra
tionalize observations that low levels of dimers can cause severe inst
ability, if we assume they are distributed evenly in cell populations.
We report here that dimer distribution is in fact heterogeneous in re
combination-proficient strains. Most cells in the population contain o
nly monomers; dimers are confined to a small subpopulation from which
plasmid-free daughters arise at high frequency. In a rec+ culture wher
e 4% of pBR322 molecules are dimers, more than half are in dimer-only
cells. We show that this situation is inevitable because dimers replic
ate at twice the rate of monomers. Runaway multimerization is avoided
because dimer-containing cells grow more slowly than their monomer-con
taining counterparts. A computer simulation is used to show how dimers
proliferate after formation by homologous recombination. The equilibr
ium concentration of dimers is proportional to the inter-plasmid recom
bination rate and is essentially independent of the rate at which homo
logous recombination converts dimers to monomers.