K. Prout et al., STRUCTURES OF 9 HISTAMINE-H-2 ANTAGONISTS RELATED TO -CYANO-N'-METHYL-N''-[4-(2-PYRIDYL)BUTYL]GUANIDINE, Acta crystallographica. Section B, Structural science, 49, 1993, pp. 547-559
The crystal and molecular structures of the following compounds showin
g histamine H-2-antagonist activity have been determined: (1) hyl-N''-
{2-[(2-pyridyl)methylthio]ethyl}guanidine, C11H15N5S, M(r) = 249.33, t
riclinic, P1BAR, a = 7.482(2), b = 9.775(2), c = 10.019(1) angstrom, a
lpha = 116.00(1), beta = 102.00(2), gamma = 96.78(2)-degrees, V = 625.
7 angstrom3, Z = 2, D(x) = 1.32 g cm-3, lambda(Cu Kalpha) = 1.5418 ang
strom, mu = 21.21 cm-1, F(000) = 264, R = 4.98% for 2490 observed refl
exions. (2) -[(3-methoxy-2-pyridyl)methylthio]ethyl}guanidine, C12H17N
5OS, M(r) = 279.36, monoclinic, P2(1)/a, a = 8.670(4), b = 14.095(4),
c = 11.682(2) angstrom, beta = 99.32(7)-degrees, V = 1408.7 angstrom3,
Z = 4, D(x) = 1.32 g cm-3, lambda(Mo Kalpha) = 0.71069 angstrom, mu =
2.3 cm-1, F(000) = 592, R = 3.72% for 1880 observed reflexions. (3) {
2-[(3-bromo-2-pyridyl)methylthio]ethyl}guanidine, C11H14-BrN5S, M(r) =
328.23, monoclinic, P2(1)/c, a = 10.928(4), b = 9.183(2), c = 14.229(
8) angstrom, beta = 100.4(8)-degrees, V = 1404.42 angstrom3, Z = 4, D(
x) = 1.55 g cm-3, lambda(Mo Kalpha) = 0.71069 angstrom, mu = 32.3 cm-1
, F(000) = 664, R = 4.43% for 1952 observed reflexions. (4) -Cyano-N'-
methyl-N''-[4-(2-pyridyl)butyl]guanidine monohydrate, C12H17N5.H2O, M(
r) = 249.31, monoclinic, I2/c, a = 15.570(8), b = 10.390(3), c = 17.38
3(4) angstrom, beta = 99.38(2)-degrees, V = 2774.3 angstrom3, Z = 8, D
(x) = 1.19 g cm-3, lambdaA(Cu Kalpha) = 1.5418 angstrom, mu = 6.62 cm-
1, F(000) = 1072, R = 4.00% for 2116 observed reflexions. (5) -methyl-
N''-[4-(3-methyl-2-pyridyl)butyl]guanidine monohydrate, C13H19N5.H2O,
M(r) = 263.34, triclinic, P1BAR, a = 7.860(2), b = 9.388(1), c = 9.706
(1) angstrom, alpha = 92.96(1), beta = 95.89(1), gamma = 91.49(1)-degr
ees, V = 708.45 angstrom3, Z = 2, D(x) = 1.23 g cm-3 , lambda(Cu Kalph
a) = 1.5418 angstrom, mu = 6.72 cm-1, F(000) = 284, R = 5.16% for 2697
observed reflections. (6) ethyl-N''-[4-(3-methoxy-2-pyridyl)butyl]gua
nidine, C13H19N5O, M(r) = 261.33, monoclinic, I2/c, a = 23.780(4), b =
9.162(2), c = 28.144(5) angstrom, beta = 111.47(1)-degrees, V = 5706.
8 angstrom3, Z = 16, D(x) = 1.22 g cm-3, lambda(Mo Kalpha) = 0.71069 a
ngstrom, mu = 0.88 cm-1, F(000) = 2240, R = 3.75% for 3554 observed re
flexions. (7) methyl-N''-[4-(3-fluoro-2-pyridyl)butyl]guanidine, C12H1
6FN5, M(r) = 249.29, monoclinic, P2(1)/n, a = 4.6267(3), b = 13.846(1)
, c = 19.828(2) angstrom, beta = 93.14(1)-degrees, V = 1268.95 angstro
m3, Z = 4, D(x) = 1.31 g cm-3, lambda(Cu Kalpha) = 1.5418 angstrom, mu
= 7.89 cm-1, F(000) = 528, R = 6.19% for 2303 observed reflexions. (8
) -methyl-N''-[4-(3-bromo-2-pyridyl)butyl]guanidine, C12Hl6BrN5, M(r)
= 310.2, monoclinic, P2(1)/c, a = 14.104(8), b = 12.678(4), c = 7.812(
3) angstrom, beta = 101.92(4)-degrees, V = 1366.7 angstrom3, Z = 4, D(
x) = 1.51 g cm-3, lambda(Mo Kalpha) = 0.71069 angstrom, mu = 31.77 cm-
1, F(000) = 632, R = 3.7% for 1463 observed reflexions. (9) methyl-N''
-[4-(5-methoxy-2-pyridyl)butyl]guanidine monohydrate, C13H19N50.H2O, M
(r) = 279.34, triclinic, P1BAR, a = 7.700(1), b = 9.331(1), c = 10.767
(1) angstrom, alpha = 78.52(1), beta = 85.56(1), gamma = 76.46(1)-degr
ees, V = 736.56 angstrom3, Z = 2, D(x) = 1.26 g cm-3, lambda(Mo Kalpha
) = 0.71069 angstrom, mu = 0.95 cm-1, F(000) = 300, R = 4.19% for 3687
observed reflexions. The molecular dimensions and environments in the
crystal are reported, together with the molecular conformations from
the structure analyses and modelling studies. It is concluded that bio
logical activity is maximized for molecules in which there is a preval
ence of low-energy molecular conformations with the aromatic N-atom to
N''-atom distance between 3 and 5 angstrom.