Two rat calcitonin receptor isoforms have been identified by cDNA clon
ing from a hypothalamic library. The clones, C1a and C1b, specified pr
oteins of 478 and 515 amino acids, respectively. The clones were ident
ical, except that the C1b sequence encoded a 37-amino acid insert in t
he second extracellular domain, which conferred altered ligand recogni
tion. Compared to the C1a receptor, expressed C1b receptors exhibited
decreased affinity for porcine CT, relative to salmon CT, and negligib
le affinity for human CT. Clone C1b mRNA was predominately expressed i
n the brain, whereas mRNA for the C1a clone was present in both brain
and peripheral tissues. Both receptors were able to couple functionall
y to adenylate cyclase. Thus, clone C1b represents a novel brain isofo
rm of the CT receptor with different affinity for CT analogs resulting
from an altered second extracellular domain.