GENOMIC MAPPING WITH I-CEU I, AN INTRON-ENCODED ENDONUCLEASE SPECIFICFOR GENES FOR RIBOSOMAL-RNA, IN SALMONELLA SPP, ESCHERICHIA-COLI, ANDOTHER BACTERIA
Sl. Liu et al., GENOMIC MAPPING WITH I-CEU I, AN INTRON-ENCODED ENDONUCLEASE SPECIFICFOR GENES FOR RIBOSOMAL-RNA, IN SALMONELLA SPP, ESCHERICHIA-COLI, ANDOTHER BACTERIA, Proceedings of the National Academy of Sciences of the United Statesof America, 90(14), 1993, pp. 6874-6878
Construction of physical maps of genomes by pulsed-field gel electroph
oresis requires enzymes which cut the genome into an analyzable number
of fragments; most produce too many fragments. The enzyme I-Ceu I, en
coded by a mobile intron in the chloroplast 23S ribosomal RNA (rrl) ge
ne of Chlamydomonas eugametos, cuts a 26-bp site in the rrl gene. This
enzyme digests DNA of Salmonella typhimurium at seven sites, each cor
responding to one of the rrl genes of the rrn operons, but at no other
site. These seven fragments were located on the previously determined
Xba I physical map, and the I-Ceu I sites, and thus the rrn genes of
S. typhimurium, were mapped on the 4800-kb chromosome. Escherichia col
i K-12 also yields seven fragments of sizes similar to those of S. typ
himurium, indicating conservation of rrn genes and their location, and
a chromosome size of 4600 kb. The sizes of the E. coli fragments are
close to the size predicted from restriction maps and nucleotide seque
nce. The I-Ceu I maps of Salmonella enteritidis, Salmonella paratyphi
A, B, C, and Salmonella typhi were deduced after digesting genomic DNA
with I-Ceu I and probing with DNA of S. typhimurium; the data indicat
ed strong conservation of rrn gene number and position and genome size
s up to 4950 kb. Digestion of DNA of other bacteria (species of Haemop
hilus, Neisseria, Proteus, and Pasteurella) suggested that only rrn ge
nes are cut in all these species. I-Ceu I digestion followed by pulsed
-field gel electrophoresis is a powerful tool for determining genome s
tructure and evolution.