LANGEVIN DYNAMICS SIMULATIONS OF MACROMOLECULES ON PARALLEL COMPUTERS

Authors
Citation
B. Jung, LANGEVIN DYNAMICS SIMULATIONS OF MACROMOLECULES ON PARALLEL COMPUTERS, Macromolecular theory and simulations, 6(2), 1997, pp. 507-521
Citations number
21
Categorie Soggetti
Polymer Sciences
ISSN journal
10221344
Volume
6
Issue
2
Year of publication
1997
Pages
507 - 521
Database
ISI
SICI code
1022-1344(1997)6:2<507:LDSOMO>2.0.ZU;2-6
Abstract
A parallel algorithm is developed that allows efficient Langevin-dynam ics simulations of macromolecular coils, which is the usual structure of synthetic polymers in solution and in bulk. Contrary to usual so-ca lled spatial decomposition algorithms, we map the one-dimensional topo logy of the chain molecule on the parallel computer. The speedup of th e algorithm is measured on different multi-processor systems. The reli ability of the parallel calculations is shown by comparison with seque ntial simulations.