During Drosophila development. an important aspect of body patterning
is the division of the embryo into repeating morphological units refer
red to as parasegments. The parasegmental domains are first defined at
the blastoderm stage by alternating stripes of transcripts encoded by
the pair-rule genes fushi tarazu (ftz) and even-skipped (eve) and lat
er by stripes encoded by the segment polarity genes engrailed (en) and
wingless. Here, we show that the runt gene (run) is required to gener
ate asymmetries within these parasegmental domains. Using a heat-shock
-inducible run transgene, we found that ectopic run expression leads t
o rapid repression of eve stripes and a somewhat delayed expansion of
ftz stripes. Unexpectedly, we also found that ectopic run was a rapid
and potent repressor of odd-numbered en stripes. Two remarkably differ
ent segmental phenotypes were generated as a consequence of these effe
cts. In solving the mechanisms underlying these phenotypes, we discove
red that the positioning of en stripes is largely determined by the ac
tions of negative regulators. Our data indicate that run is required t
o limit the domains of en expression in the odd-numbered parasegments,
while the odd-skipped gene is required to limit the domains of en exp
ression in the even-numbered parasegments. Activation of en at the ant
erior margins of both sets of parasegments requires the repression of
run and odd by the product of the eve gene. The spatial restriction of
gene expression via negative and double negative pathways such as the
se is likely to be a common theme during development.