The gene encoding DNA polymerase alpha from the human malaria parasite
Plasmodium falciparum has been sequenced and characterised. The deduc
ed amino acid sequence possesses the seven sequence motifs which chara
cterise eukaryotic replicative DNA polymerases (I-VII) and four of fiv
e motifs (A-E) identified in a DNA polymerases. The predicted protein
also contains sequences which are reminiscent of Plasmodium proteins b
ut absent from other DNA polymerases. These include four blocks of add
itional amino acids interspersed with the conserved motifs of the DNA
polymerases, four asparagine rich sequences and a novel carboxy-termin
al extension. Repetitive sequences similar to those found in other mal
arial proteins are also present. cDNA-directed PCR was used to establi
sh the presence of these features in the approximately 7kb mRNA. The c
oding sequence contains a single intron. The gene for DNAPolalpha is l
ocated on chromosome 4 and is transcribed in both asexual and sexual e
rythrocytic stages of the parasite.