We have investigated the DNA methylation patterns in genomically impri
nted genes of the mouse. Both Igf2 and H19 are associated with clear-c
ut regions of allele-specific paternal modification in late embryonic
and adult tissues. By using a sensitive PCR assay, it was possible to
follow the methylation state of individual HpaII sites in these genes
through gametogenesis and embryogenesis. Most of these CpG moieties ar
e not differentially modified in the mature gametes and also become to
tally demethylated in the early embryo in a manner similar to non-impr
inted endogenous genes. Thus, the overall allele-specific methylation
pattern at these sites must be established tater during embryogenesis
after the blastula stage. In contrast, sites in an Igf2r gene intron a
nd one CpG residue in the Igf2 upstream region have allele-specific mo
dification patterns which are established either in the gametes or sho
rtly after fertilization and are preserved throughout pre-implantation
embryogenesis. These studies suggest that only a few DNA modification
s at selective positions in imprinted genes may be candidates for play
ing a rote in the maintenance of parental identity during development.