A second family of highly repeated sequences has been identified on th
e B chromosome of rye (Secale cereale). The E3900 family was detected
as a variant band in EcoRI digests of +B DNA. A clone of the basic rep
eat of the family was obtained, and the organization of the family was
investigated by genomic hybridization. The E3900 family has no appare
nt homology to the A chromosome sequences of rye or other members of t
he Gramineae. The family has been localized by in situ hybridization t
o the end of the long arm of the rye B chromosome. The previously char
acterized E1100 sequence shows in situ hybridization to the same locat
ion as the E3900 family. These results are discussed in light of curre
nt theories of the origin of B chromosomes.