The POU-type homeodomain protein UNC-86 and the LIM-type homeodomain p
rotein MEC-3, which specify neuronal cell fate in the nematode Caenorh
abditis elegans, bind cooperatively as a heterodimer to the mec-3 prom
oter. Heterodimer formation increases DNA binding stability and, there
fore, increases DNA binding specificity. The in vivo significance of t
his heterodimer formation in neuronal differentiation is suggested by
(i) a loss-of-function mec-3 mutation whose product in vitro binds DNA
well but forms heterodimers with UNC-86 poorly and (ii) a mec-3 mutat
ion with wild-type function whose product binds DNA poorly but forms h
eterodimers well.