M. Cushman et al., F-19 NMR-STUDIES OF THE MECHANISM OF RIBOFLAVIN SYNTHASE - SYNTHESIS OF 6-(TRIFLUOROMETHYL)-8-(D-RIBITYL)LUMAZINE AND DERIVATIVES, Journal of organic chemistry, 58(15), 1993, pp. 4033-4042
6-(Trifluoromethyl)-8-(D-ribityl)lumazine (17) was synthesized in orde
r to study its reactivity at C-7 and its binding to riboflavin synthas
e of Bacillus subtilis. Compound 17 was prepared by reaction of o-4-[(
D-ribityl)amino]-2,4-(1H,3H)-pyrimidinedione hydrochloride (3.HCl) wit
h trifluoropyruvaldehyde hydrate (18). NMR studies revealed that under
basic conditions, 17 forms only one major anionic species in which th
e oxygen of the 3'-hydroxyl group on the ribityl side chain binds cova
lently to C-7 of the lumazine, resulting in the formation of a pyran r
ing. As a model for possible addition of nucleophilic groups on the en
zyme to C-7 of 17, the reactions of 17 with a variety of sulfur nucleo
philes were studied. Fluorolumazine 17 was found to form covalent addu
cts 27-31 with sulfite, sulfide, mercaptoethanol, D,L-1,4-dithiothreit
ol, and L-cysteine. Three molecules of 17 were found to bind per enzym
e molecule (alpha subunit trimer). Equilibrium dialysis experiments an
d F-19 NMR spectroscopy provided dissociation constants K(D) of 38 and
100 muM, respectively. The inhibition constant K(I) was 58 muM. There
was no evidence obtained for the formation of a covalent adduct betwe
en the fluorolumazine 17 and the enzyme, suggesting that the nucleophi
le adding to C-7 during the enzyme-catalyzed reaction is derived from
water. The covalent adducts obtained from 17 were found to bind to the
enzyme significantly more tightly than 17 itself. The covalent adduct
s 27-31 as well as 17 could be displaced from the enzyme by both ribof
lavin (2) and o-6-[(D-ribityl)-amino]-2,4(1H,3H)-pyrimidinedione (32).