A method that allows the directional cloning of blunt-ended polymerase
chain reaction (PCR) fragments is described. One PCR primer must be 5
' phosphorylated Extra bases are not required on either PCR primer. A
linearized vector is enzymatically processed to contain a single 5'-te
rminal phosphate. The monophosphorylated vector is amenable to recombi
nant-insertion during ligation when the fragment is in the correct ori
entation. Increased recombinant yield results from incubating the mono
phosphorylated vector with a restriction enzyme (SrfI) that relineariz
es nonrecombinant plasmids during the ligation reaction.