L. Leherte et Dp. Vercauteren, CRITICAL-POINT ANALYSIS OF CALCULATED ELECTRON-DENSITY MAPS AT MEDIUMRESOLUTION - APPLICATION TO SHAPE-ANALYSIS OF ZEOLITE-LIKE SYSTEMS, JOURNAL OF MOLECULAR MODELING, 3(4), 1997, pp. 156-171
A method, derived from the procedure implemented in the program ORCRIT
which was originally developed by C.K. Johnson, is presented for the
topological analysis of zeolite electron density maps. This method is
an approach to shape analysis of zeolitic frameworks through the locat
ion, identification, and linkage of critical points (points where the
gradient of the density vanishes) in medium resolution electron densit
y maps. It is observed that, at 3 Angstrom resolution, tetrahedral sit
es and oxygen atoms generate peaks (density maxima) and passes (saddle
points), respectively. The defnition of ellipsoids, built at each pea
k location from their three local density curvatures, is used to gener
ate a void volume wherein atomic or molecular probes can interact. The
energetic behaviour of probes of several sizes interacting with ferri
erite and mordenite is qualitatively studied through a pseudo- Lennard
-Jones potential approximation.