PHYLOGENETIC ANALYSIS OF THE TRITICEAE (POACEAE) BASED ON RPOA SEQUENCE DATA

Citation
G. Petersen et O. Seberg, PHYLOGENETIC ANALYSIS OF THE TRITICEAE (POACEAE) BASED ON RPOA SEQUENCE DATA, Molecular phylogenetics and evolution, 7(2), 1997, pp. 217-230
Citations number
67
Categorie Soggetti
Biology,Biology,"Genetics & Heredity
ISSN journal
10557903
Volume
7
Issue
2
Year of publication
1997
Pages
217 - 230
Database
ISI
SICI code
1055-7903(1997)7:2<217:PAOTT(>2.0.ZU;2-1
Abstract
A phylogenetic analysis was conducted on 31 diploid species representi ng 21 of the 24 monogenomic genera of the Triticeae. The data used wer e derived from a 1343- to 1358-bp region of the plastid genome spannin g the entire rpoA gene plus minor parts of the petD and rps11 genes an d the two intergenic spacers surrounding rpoA. Bromus inermis (Bromeae ) was used as an outgroup. A total of 68 variable sites, 25 of them ph ylogenetically informative, and seven length mutations were detected. The length mutations occurred in the noncoding regions. Phylogenetic a nalyses were performed on the whole data set and on various subsets. T he analysis of the unweighted data resulted in 48 equally parsimonious trees (length 98, CI = 0.88, RI = 0.92, ti = 0.25). A parsimony jackk nife analysis proved several clades to be well supported. The effect o f transition/transversion weighting was also investigated. In general, congruence with other data sets was negatively effected by weighting. The preferred phylogenetic hypothesis is congruent with a phylogeny b ased on plastid RFLP data including the same taxa, but it is largely i ncongruent with phylogenies derived from nuclear rDNA and morphology. (C) 1997 Academic Press.