G. Petersen et O. Seberg, PHYLOGENETIC ANALYSIS OF THE TRITICEAE (POACEAE) BASED ON RPOA SEQUENCE DATA, Molecular phylogenetics and evolution, 7(2), 1997, pp. 217-230
A phylogenetic analysis was conducted on 31 diploid species representi
ng 21 of the 24 monogenomic genera of the Triticeae. The data used wer
e derived from a 1343- to 1358-bp region of the plastid genome spannin
g the entire rpoA gene plus minor parts of the petD and rps11 genes an
d the two intergenic spacers surrounding rpoA. Bromus inermis (Bromeae
) was used as an outgroup. A total of 68 variable sites, 25 of them ph
ylogenetically informative, and seven length mutations were detected.
The length mutations occurred in the noncoding regions. Phylogenetic a
nalyses were performed on the whole data set and on various subsets. T
he analysis of the unweighted data resulted in 48 equally parsimonious
trees (length 98, CI = 0.88, RI = 0.92, ti = 0.25). A parsimony jackk
nife analysis proved several clades to be well supported. The effect o
f transition/transversion weighting was also investigated. In general,
congruence with other data sets was negatively effected by weighting.
The preferred phylogenetic hypothesis is congruent with a phylogeny b
ased on plastid RFLP data including the same taxa, but it is largely i
ncongruent with phylogenies derived from nuclear rDNA and morphology.
(C) 1997 Academic Press.