Chromosome size polymorphism among nine isolates of Leptosphaeria macu
lans was studied by hybridization of homologous and heterologous DNA f
ragments to chromosomes separated by contour-clamped homogeneous elect
ric field (CHEF) electrophoresis. Four of the fungal isolates were hig
hly virulent and three were weakly virulent in Brassica plants; the re
maining two originated from the cruciferous weed Thlaspi arvense. Ther
e was a high degree of chromosome size polymorphism, and no two isolat
es had the same karyotype. However, three general patterns could be di
stinguished by differences in size range, distribution of bands within
the size ranges, and hybridization to probes. These three banding pat
terns corresponded to the three pathogenicity groups. The four highly
virulent isolates had 12-14 chromosomal bands with estimated sizes ran
ging from 0.7 to 3.7 Mb. The three weakly virulent isolates had 11 or
12 bands with sizes between 0.8 and 2.7 Mb, and the two Thlaspi isolat
es had 14 and 16 bands with sizes between 1.0 and 3.2 Mb. Some of the
bands were brighter than average and may represent more than one chrom
osome. The weakly virulent and Thlaspi isolates had a higher proportio
n of small chromosomes, while those of the highly virulent isolates we
re more evenly distributed throughout the size range. Most of the DNA
fragments used as probes hybridized to a single chromosome in each iso
late and to chromosomes of similar sizes (+/- 0.5 Mb) within a pathoge
nicity group, but often to a chromosome with a very different size in
isolates from the other pathogenicity groups. Hybridization to many ch
romosomes by DNA fragments cloned from one of the highly virulent isol
ates indicated the presence of repetitive sequences specific for highl
y virulent isolates. The results indicate that these pathogenicity gro
ups are very different from each other and perhaps different species.