The chloroplast DNA (ctDNA) type was determined for most of Japanese p
otato varieties including both officially registered and unregistered
varieties and those of unknown origin. Many modern varieties have T ty
pe ctDNA similar to the present European potatoes. Some varieties have
W type ctDNA which was derived from S. demissum. Most of varieties of
unknown origin have T type ctDNA. It indicates those were introduced
after late blight epidemics in Europe and/or bred from them. Four old
varieties have A type ctDNA which is typical to Andean potatoes and ha
s been found in a derivative of the oldest European variety, Myatt's A
shleaf. Considering the historical background in Japanese potatoes, it
is suggested that these old varieties are relic potatoes of the early
European potato and similar ctDNA introduction and incorporation occu
rred in both Europe and Japan.