Dr. Knighton et al., STRUCTURAL FEATURES THAT SPECIFY TYROSINE KINASE-ACTIVITY DEDUCED FROM HOMOLOGY MODELING OF THE EPIDERMAL GROWTH-FACTOR RECEPTOR, Proceedings of the National Academy of Sciences of the United Statesof America, 90(11), 1993, pp. 5001-5005
To identify structural features that distinguish protein-tyrosine kina
ses from protein-serine kinases, a molecular model of the kinase domai
n of epidermal growth factor receptor was constructed by substituting
its amino acid sequence for the amino acid sequence of the catalytic s
ubunit of cAMP-dependent protein kinase in a 2.7-angstrom refined crys
tallographic model. General folding was conserved as was the configura
tion of invariant residues at the active site. Two sequence motifs tha
t distinguish the two families correspond to loops that converge at th
e active site of the enzyme. A conserved arginine in the catalytic loo
p is proposed to interact with the gamma phosphate of ATP. The second
loop provides a binding surface that positions the tyrosine of the sub
strate. A positively charged surface provides additional sites for sub
strate recognition.