The nuclear 18S, 5.8S and 25S rRNA genes exist as thousands of rDNA re
peats in the Scots pine genome. The number and location of rDNA loci (
nucleolus organizers, NORs) were studied by cytological methods, and a
restriction map from the coding region of the Scots pine rDNA repeat
was constructed using digoxigenin-labeled flax rDNA as a probe. Based
on the maximum number of nucleoli and chromosomal secondary constricti
ons, Scots pine has at least eight NORs in its haploid genome. The siz
e of the Scots pine rDNA repeat unit is approximately 27 kb, two- or t
hreefold larger than the typical angiosperm rDNA unit, but similar in
size to other characterized conifer rDNA repeats. The intergenic space
r region (IGS) of the rDNA repeat unit in Scots pine is longer than 20
kb, and the transcribed spacer regions surrounding the 5.8S gene (ITS
1 and ITS2) span a region of 2.9 kb. Restriction analysis revealed tha
t although the coding regions of rDNA repeats are homogeneous, heterog
eneity exists in the intergenic spacer region between individuals, as
well as among the rDNA repeats within individuals.