Mucosal candidiasis is a common complication of HIV infection and HIV-
positive women may develop both oropharyngeal and vaginal disease, Col
onization with Candida albicans and related species at either site is
a common preceding event in asymptomatic women, To examine the molecul
ar epidemiology of colonizing yeast strains in HIV-positive women, con
current oropharyngeal and vaginal cultures were obtained from 32 women
(mean CD4 count 392 cells/mm(3), range 0-1319). Positive oropharyngea
l cultures were obtained in 18 (56%) and positive vaginal cultures in
10 (31%), Candida species were isolated from both sites simultaneously
in nine (28%) women, All strains were evaluated for restriction fragm
ent length polymorphisms (RFLPs) at the ribosomal DNA locus (using a h
eterologous 8.4-kb NotI probe from H. capsulatum) and with a C. albica
ns-specific repetitive DNA probe, Isolates were grouped into three cla
sses by the NotI probe and then members of each class were evaluated w
ith the C. albicans-specific probe, Isolates were subsequently evaluat
ed by random amplified polymorphic DNA (RAPD) PCR with four arbitrary
primers to detect strain-specific differences, All isolates tested wer
e unique and could be discriminated by RFLP or RAPD PCR, Vaginal and o
ropharyngeal isolates from the same individual in all nine cases were
dissimilar, suggesting that the dominant strain of Candida colonizing
different body sites is different, These findings suggest that the epi
demiology of Candida infection in HIV disease is complex, that the dev
elopment of oropharyngeal and vaginal disease may be disassociated, an
d that HIV-positive patients are each infected by their own unique str
ains of Candida.