The limnology of Lakes Malawi, Tanganyika, and Victoria is discussed w
ith the objective of examining how the physical, chemical, and biologi
cal properties of the lakes will determine the response of these ancie
nt great lake ecosystems to human activities. Of the physical properti
es discussed, large dilution capacities and long flushing times can ma
ke the detection and removal of chemical pollutants in these lakes dif
ficult The outflows of all three lakes are small because of high evapo
ration losses, and as a result lake levels are responsive to climate c
hanges that would alter evaporation; precipitation ratios. Increased n
utrient input to these lakes will likely result in a decrease in the v
olume of oxygenated water and available fish habitat. Plankton communi
ty composition will also change, probably toward dominance by cyanobac
teria While the effects of eutrophication on fish production are diffi
cult to predict, changes in plankton composition would almost certainl
y be accompanied by changes in fish community structure. Recent studie
s of water chemistry and plankton productivity in Lake Victoria provid
e evidence of possible eutrophication Because land use has a diffuse b
ut potentially large impact on these lakes, conservation strategies mu
st take into account human activities within entire drainage basins. T
his requires cooperation between riparian countries and technological
and financial input from the international community. An immediate nee
d is the establishment of monitoring programs to determine the impact
real or potential, of human activities around the lakes.