The active site of influenza virus neuraminidase (NA) is formed by 11
universally conserved residues. A guanidino group incorporated into tw
o unrelated NA inhibitors was previously reported to occupy different
negatively charged sites in the NA active site. A new inhibitor contai
ning two guanidino groups was synthesized in order to utilize both sit
es in an attempt to acquire a combined increase in affinity. The X-ray
crystal structures of the complexes show that the expected increase i
n affinity could not be achieved even though the added guanidino group
binds to the negatively charged site as designed. This suggests that
the ligand affinity to the target protein is contributed both from lig
and-protein interactions and solvation/conformation energy of the liga
nd. (C) 1997 Academic Press Limited.