The extent to which alleles can disperse across a hybrid zone depends
on the selection they are subjected to in the hybrid genetic backgroun
d or, for those that are selectively neutral, on their ability to esca
pe from the unfavourable environment by recombination. Three markers s
panning a 45 cM segment in the center of the X chromosome were used to
investigate the degree to which selection against X chromosome linked
genes helps to maintain the barrier to gene flow in the hybrid zone b
etween Mus musculus domesticus and M. m. musculus in Denmark. The intr
ogression of all the sex chromosome specific markers was more limited
than that of the autosomal enzymes (Idh1, Amv, Gpd1, Pgm1, Es1, Es2, M
pi, Np1, Es10, Sod1) and the mitochondrial DNA. The cline for DXPas2,
which is in the center of the X chromosome, is extremely steep and sho
ws that certain genes located in this region are strongly selected aga
inst in the hybrid background. The clines of the other two X-linked ma
rkers, Hprt and DXPas1, and of the Y chromosome are not as abrupt and
all three have similar asymmetric introgression patterns. Although the
musculus variants appear to behave in much the same way as those of t
he autosomal genes, the domesticus variants do not introgress. The res
ults show that X-linked and to a lesser extent Y-linked genes are more
strongly selected against in the hybrid genome than the mitochondrial
genome or the different autosomal loci. This suggests that co-adapted
gene systems involving the sex chromosomes may play an important role
in the hybrid breakdown between the two subspecies.